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LTR_Finder

LTR_Finder

LTR_Finder (Long Terminal Repeat Finder) is a web-based tool to find full-length LTR retrotransposons in genome sequences.

Topic

Transcription factors and regulatory sites; Sequence composition, complexity and repeats; Sequencing; Whole genome sequencing; Genomics

Details

  • Operation: Repeat sequence detection; Repeat sequence analysis
  • Input: FASTA | multi-FASTA
  • Output: -
  • Software interface: Web user interface
  • Language: ;LTR_Finder (Long Terminal Repeat Finder) is an efficient program for finding full-length LTR retrotransposons in genome sequences.;Web application
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Legacy
  • Credit: Fudan University.
  • Contact: xuzh _at_ fudan.edu.cn
  • Collection: -

Publications

Xu Z, Wang H "LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons." Nucleic Acids Res. 2007; 35(Web Server issue):W265-8 https://doi.org/10.1093/nar/gkm286
PMID: 17485477
PMCID: PMC1933203


Download and documentation

Currently not available or not maintained.




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