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unitas

unitas

unitas is a tool to annotate small non-coding RNA datasets generated by high-throughput sequencing. The unitas algorithm uses the latest reference sequences from public online databases for the annotation.

Topic

RNA; Sequence analysis; Nucleic acid structure analysis

Details

  • Operation: Sequence annotation
  • Input: FASTA; FASTQ; SAM; ELAND3
  • Output: SAM; ELAND3
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Creative Commons Attribution Non-Commercial License V2.0
  • Cost: Free
  • Version name: 1.71
  • Credit: The Natural and Medical Sciences Research Center of the University Medicine Mainz (NMFZ), the International PhD Programme coordinated by the Institute of Molecular Biology (IMB), Mainz, the Boehringer Ingelheim Foundation.
  • Contact: dgebert _at_ students.uni-mainz.de
  • Collection: -

Publications

Gebert D, Hewel C, Rosenkranz D "unitas: the universal tool for annotation of small RNAs." BMC Genomics 2017; 18(1):644 https://doi.org/10.1186/s12864-017-4031-9
PMID: 28830358
PMCID: PMC5567656


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