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atSNP

atSNP

atSNP ( Affinity Test for regulatory SNP detection ) is a tool for computation of affinity scores single nucleotide polymorphism (SNP) and a reference. The atSNP algorithm computes p-values based on position weight matrices (PWMs).

Topic

DNA polymorphism; Bioinformatics; Statistics and probability

Details

Publications

Zuo C, Shin S, Keles S "atSNP: transcription factor binding affinity testing for regulatory SNP detection." Bioinformatics. 2015 Oct 15;31(20):3353-5. Epub 2015 Jun 18. https://doi.org/10.1093/bioinformatics/btv328
PMID: 26092860
PMCID: PMC4643619


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