ASAP

ASAP is a pipeline tool for the analysis of single-cell RNA-seq (scRNA) data. The ASAP tool includes functions for the identification of cell clusters, differentially expressed genes, enrichment analysis, and a variety of visualization tools.

Details
Topic
Publications
Download and documentation

ASAP

Topic

Cell biology; RNA; RNA-seq; Data visualisation

Details

Operation: Sequence visualisation; RNA-Seq analysis
Software interface: Command-line user interface; web user interface
Language: R;Python;Java
Operating system: Linux; Mac OS X
License: GNU General Public License v3

Cost

Version name: -

Maturity:

Credit: The Swiss National Science Foundation, EPFL and Human Frontier Science Program.
Contact: Bart Deplancke bart.deplancke _at_ epfl.ch
Collection: -

Publications

Gardeux V, David FPA, Shajkofci A, Schwalie PC, Deplancke B "ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data." Bioinformatics. 2017 Oct 1;33(19):3123-3125. https://doi.org/10.1093/bioinformatics/btx337
PMID: 28541377
PMCID: PMC5870842

Download and documentation

Source: https://github.com/DeplanckeLab/ASAP
Documentation: https://github.com/DeplanckeLab/ASAP/blo
b/master/README.md
Home page: https://github.com/DeplanckeLab/ASAP

If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News

TOOLS

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched

Database of Bioinformatics Software Tools and Resources.

Ads

ASAP

ASAP

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools