A tool for batch alignment of single-cell RNA-seq transcriptome data. The BBKNN algorithm uses graph-based data integration to increase alignment speed. It first identifies k nearest neighbors and transforms candidates to connectivities for subsequent analyses.
Transcriptomics; RNA-seq
Polanski K, Park JE, Young MD, Miao Z, Meyer KB, Teichmann SA "BBKNN: Fast Batch Alignment of Single Cell Transcriptomes." Bioinformatics. 2019 Aug 10. pii: 5545955. https://doi.org/10.1093/bioinformatics/btz625
PMID: 31400197
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