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BM-DE

BM-DE

BM-DE (Bayesian method of calling differential expression) is a tool for differential gene expression (DGE) analysis of RNA_seq data. The BM-DE algorithm models read counts at each position using Bayesian statistics and can analyze data without biological replicates.

Topic

RNA-Seq; Gene expression; RNA; RNA-Seq

Details

  • Operation: Differential gene expression analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Public domain
  • Cost: Free
  • Version name: -
  • Credit: The National Institutes of Health (NIH).
  • Contact: Juhee Lee yuanji _at_ mdanderson.org
  • Collection: -

Publications

Lee J, Ji Y, Liang S, Cai G, Müller P "On differential gene expression using RNA-Seq data." Cancer Inform 2011 https://doi.org/10.4137/CIN.S7473
PMID: 21863128
PMCID: PMC3153162


Download and documentation

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