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BNBR

BNBR

BNBR is an R tool for the analysis of differential expression in RNA-seq data. The BNBR algorithm uses a new Bayesian negative binomial regression technique (BNB-R).

Topic

Statistics and probability; Gene expression; RNA-seq

Details

  • Operation: Differential gene expression analysis; Regression analysis
  • Software interface: Command-line user interface; Library
  • Language: C;R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 1.0
  • Maturity: Emerging
  • Credit: The USDA-SCRI, the National Science Foundation, USDA NIFA.
  • Contact: Siamak Zamani Dadaneh siamak _at_ tamu.edu | Mingyuan Zhou mingyuan.zhou _at_ mccombs.utexas.edu | Xiaoning Qian xqian _at_ ece.tamu.edu
  • Collection: -

Publications

Dadaneh SZ, Zhou M, Qian X "Bayesian negative binomial regression for differential expression with confounding factors." Bioinformatics. 2018 Oct 1;34(19):3349-3356. https://doi.org/10.1093/bioinformatics/bty330
PMID: 29688254


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