For better experience, turn on JavaScript!

BRIE
Home » Tools » RNA-seq Tools and Software » RNA-seq core analysis » BRIE

BRIE

BRIE (Bayesian regression for isoform estimation) is a tool to quantify splicing from RNA-seq data. The BRIE algorithm learns prior distribution isoform proportions from the sequences in samples using a Bayesian hierarchical model.



BRIE

BRIE (Bayesian regression for isoform estimation) is a tool to quantify splicing from RNA-seq data. The BRIE algorithm learns prior distribution isoform proportions from the sequences in samples using a Bayesian hierarchical model.

Topic

Genetic variation; RNA-seq; RNA splicing

Details

  • Operation: Genetic variation analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Apache-2.0
    • Cost: Free
  • Version name: 0.1.1
    • Maturity: Emerging
  • Credit: European Research Council, University of Edinburgh.
  • Contact: Yuanhua Huang Y.Huang _at_ ed.ac.uk
  • Collection: -

Publications

Huang Y, Sanguinetti G "BRIE: transcriptome-wide splicing quantification in single cells." Genome Biol. 2017 Jun 27;18(1):123. https://doi.org/10.1186/s13059-017-1248-5
PMID: 28655331
PMCID: PMC5488362


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads