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BamView

BamView

BamView is a tool to visualize data in sequence reads aligned on a reference genome sequence.

Topic

Sequence analysis

Details

  • Operation: Sequence visualisation
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 18.1.0
  • Maturity: Stable
  • Credit: The Wellcome Trust, the Wellcome Trust Sanger Institute.
  • Contact: artemis _at_ sanger.ac.uk
  • Collection: -

Publications

Carver T, Harris SR, Otto TD, Berriman M, Parkhill J, McQuillan JA "BamView: visualizing and interpretation of next-generation sequencing read alignments." Brief. Bioinformatics 2013; 14(2):203-12 https://doi.org/10.1093/bib/bbr073
PMID: 22253280
PMCID: PMC3603209


Carver T, Böhme U, Otto TD, Parkhill J and Berriman M "BamView: viewing mapped read alignment data in the context of the reference sequence" Bioinformatics (Oxford, England) 2010;26;5;676-7 https://doi.org/10.1093/bioinformatics/btq010
PMID: 20071372
PMCID: PMC2828118


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