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BinPacker
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BinPacker

BinPacker is a tool for de novo RNA-seq full-length transcriptome assembly. It can handle paired-end reads.



BinPacker

BinPacker is a tool for de novo RNA-seq full-length transcriptome assembly. It can handle paired-end reads.

Topic

Transcriptomics; Sequence assembly; RNA-Seq

Details

  • Operation: Transcriptome assembly
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
    • Maturity: Mature
  • Credit: National Natural Science Foundation of China, National Science Foundation, National Center for Research Resources, National Institute of General Medical Sciences.
  • Contact: Guojun Li guojunsdu _at_ gmail.com | Xiuzhen Huang xhuang _at_ astate.edu
  • Collection: -

Publications

Liu J, Li G, Chang Z, Yu T, Liu B, McMullen R, Chen P, Huang X "BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data." PLoS Comput Biol. 2016 Feb 19;12(2):e1004772. eCollection 2016 Feb. https://doi.org/10.1371/journal.pcbi.1004772
PMID: 26894997
PMCID: PMC4760927


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