CADBURE

CADBURE is a tool

Topic

RNA-Seq

Details

Operation: Alignment
Software interface: Command-line user interface
Language: Perl
Operating system: Linux
License: GNU General Public License v>=3

Cost

Version name: -

Credit: The National Institutes of Health (NIH).
Contact: Praveen Kumar Raj Kumar praveenk _at_ pitt.edu | Chun Liang liangc _at_ miamioh.edu
Collection: -

Publications

Kumar PK, Hoang TV, Robinson ML, Tsonis PA, Liang C "CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data." Sci Rep 2015 https://doi.org/10.1038/srep13443
PMID: 26304587
PMCID: PMC4548254

Download and documentation

Source: https://sourceforge.net/projects/cadbure
/files/Source/CADBURE_20151031/
Documentation: https://sourceforge.net/projects/cadbure
/files/Manual/
Home page: http://cadbure.sourceforge.net/

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CADBURE

CADBURE

Topic

Details

Publications

Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

4. MSA tools

5. CNV tools

6. WGA tools

7. RNA-seq tools

8. Proteomics Tools

9. Nucleic Acid Structure Analysis Tools

10. Nucleic Acid Sequence Analysis Tools

11. Sequence Logo Tools

12. In-house Software Tools