CPSS is a web-based tool for the analysis of microRNAs (miRNAs) and non-coding RNAs (ncRNAs) in RNA-seq data. It performs functional annotation, distribution of lengths, mapping, quantification, prediction of novel micro RNAs, identification of piwi-interacting and differentially expressed miRNAs, editing, prediction of signaling pathways, protein-protein interactions of predicted genes, detection of non-coding and differentially expressed RNAs (ncRNAs). CPSS also visualizes results as charts and graphs.
RNA-seq; Sequencing; Functional, regulatory and non-coding RNA
Wan C, Gao J, Zhang H, Jiang X, Zang Q, Ban R, Zhang Y, Shi Q "CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data." Bioinformatics. 2017 Oct 15;33(20):3289-3291. https://doi.org/10.1093/bioinformatics/btx066
PMID: 28177064
PMCID: PMC5860027
Zhang Y, Xu B, Yang Y, Ban R, Zhang H, Jiang X, Cooke HJ, Xue Y, Shi Q "CPSS: a computational platform for the analysis of small RNA deep sequencing data." Bioinformatics. 2012 Jul 15;28(14):1925-7. https://doi.org/10.1093/bioinformatics/bts282
PMID: 22576177
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