Cardelino is an R tool to identify clones in single-cell RNA-seq data. The Cardelino algorithm has methods for inferring clonal structures in a cell population and analyses of differential gene expression.
Transcriptomics; RNA-seq
Davis J. McCarthy, Raghd Rostom, Yuanhua Huang, Daniel J. Kunz, Petr Danecek, Marc Jan Bonder, Tzachi Hagai, HipSci Consortium, Wenyi Wang, Daniel J. Gaffney, Benjamin D. Simons, Oliver Stegle, Sarah A. Teichmann "Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants" biorxiv.org https://doi.org/10.1101/413047
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