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Cascade
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Cascade

A web-based tool for 3D visualization of RNA-seq data sets from cancer genomic investigations. The Cascade can visualize such data, as alternative splicing frequencies, mutations, and gene expressions.



Cascade

A web-based tool for 3D visualization of RNA-seq data sets from cancer genomic investigations. The Cascade can visualize such data, as alternative splicing frequencies, mutations, and gene expressions.

Topic

Genomics; Oncology; RNA-seq

Details

  • Operation: Genome visualisation
  • Software interface: Web user interface
  • Language: HTML5;CSS;JavaScript
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: The Cole Foundation (BTW), the Cancer Research Society (BTW), The Natural Sciences and Engineering Research Council of Canada (BTW), and Genome Canada (BTW).
  • Contact: ashif060 _at_ uottawa.ca | radia.johnson _at_ alum.utoronto.ca | brian.wilhelm _at_ umontreal.ca
  • Collection: -

Publications

Shifman AR, Johnson RM, Wilhelm BT "Cascade: an RNA-seq visualization tool for cancer genomics." BMC Genomics. 2016 Jan 25;17:75. https://doi.org/10.1186/s12864-016-2389-8
PMID: 26810393
PMCID: PMC4727405


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