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CellO

CellO

CellO (Cell Ontology-based classification) is a tool to classify cell types in single-cell RNA-seq data. The Authors trained the CellO algorithm using curated datasets from Sequence Read Archive at NCBI.

Topic

Transcriptomics; RNA-seq

Details

  • Operation: RNA-Seq analysis; Classification
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: the National Institutes of Health, he Chan Zuckerberg Initiative DAF, Silicon Valley Community Foundation, National Library of Medicine (NLM).
  • Contact: Colin N Dewey colin.dewey _at_ wisc.edu
  • Collection: -

Publications

Matthew N Bernstein, Colin N Dewey "Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells" biorxiv.org https://doi.org/10.1101/634097


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