DEUS

DEUS is an R tool for profiling small non-coding RNA (sncRNA) in RNA-seq data sets.

Topic

RNA-seq; Functional, regulatory and non-coding RNA

Details

Operation: RNA-Seq analysis
Software interface: Command-line user interface
Language: R
Operating system: Microsoft Windows, Mac OS X, Linux
License: GNU General Public License v3

Cost

Version name: 1.0

Maturity:

Credit: The Leona M. and Harra B Helmsley Charitable Trust, the Care-for-Rare Foundation, BMBF, German Center for Diabetes Research and the Helmholtz Alliance AMPro.
Contact: Tim Jeske tim.jeske _at_ helmholtz-muenchen.de | Maximilian Hastreiter hastreiter _at_ helmholtz-muenchen.de
Collection: -

Publications

Jeske T, Huypens P, Stirm L, Hockele S, Wurmser CM, Bohm A, Weigert C, Staiger H, Klein C, Beckers J, Hastreiter M "DEUS: an R package for accurate small RNA profiling based on differential expression of unique sequences." Bioinformatics. 2019 Nov 1;35(22):4834-4836. https://doi.org/10.1093/bioinformatics/btz495
PMID: 31228198
PMCID: PMC6853685

Download and documentation

Source: https://github.com/timjeske/DEUS
Documentation: https://timjeske.github.io/DEUS/
Home page: https://timjeske.github.io/DEUS/
Links: https://github.com/timjeske/DEUS/raw/mas
ter/sample_usage.R

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