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DendroSplit
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DendroSplit

A tool for the analysis of single-cell RNA-seq data. The DendroSplit algorithm uses a feature selection approach to cluster and to reveal different population data hierarchies.



DendroSplit

A tool for the analysis of single-cell RNA-seq data. The DendroSplit algorithm uses a feature selection approach to cluster and to reveal different population data hierarchies.

Topic

RNA-seq; Sequence analysis

Details

  • Operation: Sequence clustering
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Attribution-NonCommercial-ShareAlike 4.0 International
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: The National Human Genome Research Institute of the National Institutes of Health
  • Contact: jessez _at_ stanford.edu
  • Collection: -

Publications

Zhang JM, Fan J, Fan HC, Rosenfeld D, Tse DN "An interpretable framework for clustering single-cell RNA-Seq datasets." BMC Bioinformatics. 2018 Mar 9;19(1):93. https://doi.org/10.1186/s12859-018-2092-7
PMID: 29523077
PMCID: PMC5845381


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