EDGE-pro

EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes) is a tool to quantify gene expression in prokaryotes and archaea. The EDGE-pro algorithm can align overlapping gene regions.

Topic

RNA-seq; Gene expression

Details

Operation: Gene expression analysis; RNA-Seq analysis
Software interface: Command-line user interface
Language: C++
Operating system: Linux
License: OSI Certified Open Source Software

Cost

Version name: 1.3.1

Maturity:

Credit: The National Institutes of Health (NIH)
Contact: edge.comments _at_ gmail.com
Collection: -

Publications

Magoc T, Wood D, Salzberg SL "EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes." Evol Bioinform Online. 2013;9:127-36. https://doi.org/10.4137/EBO.S11250
PMID: 23531787
PMCID: PMC3603529

Download and documentation

Source: https://ccb.jhu.edu/software/EDGE-pro/ED
GE_pro_v1.3.1.tar.gz
Home page: https://ccb.jhu.edu/software/EDGE-pro/in
dex.shtml

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EDGE-pro

EDGE-pro

Topic

Details

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Download and documentation

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