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FastProject
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FastProject

FastProject is a tool to visualize single-cell RNA-seq (scRNA-seq) data to aid in interpretation. It computes a report of two-dimensional projections with annotations.



FastProject

FastProject is a tool to visualize single-cell RNA-seq (scRNA-seq) data to aid in interpretation. It computes a report of two-dimensional projections with annotations.

Topic

Mapping; RNA-seq

Details

  • Operation: Expression data visualisation
  • Software interface: Command-line user interface
  • Language: Python, Javascript
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
    • Cost: Free for non-commercial use
  • Version name: -
  • Credit: National Institutes of Health NRSA, the California Research Alliance by BASF (CARA), NIH.
  • Contact: David DeTomaso David.DeTomaso _at_ berkeley.edu
  • Collection: -

Publications

DeTomaso D, Yosef N "FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data." BMC Bioinformatics. 2016 Aug 23;17(1):315. https://doi.org/10.1186/s12859-016-1176-5
PMID: 27553427
PMCID: PMC4995760


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