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FastQ Screen

FastQ Screen is a tool for quality control of DNA samples by screening against a reference genomes to validate the origins.

Topic

Genomics; Transcriptomics

Details

Operation: Sequencing quality control; Read mapping
Software interface: Command-line user interface
Language: Perl
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU General Public License v>=3

Cost

Version name: 0.14.0

Maturity:

Credit: Medical Research Council (UK), the Biotechnology and Biological Sciences Research Council of the UK.
Contact: Steven Wingett steven.wingett _at_ babraham.ac.uk
Collection: -

Publications

Wingett SW, Andrews S "FastQ Screen: A tool for multi-genome mapping and quality control." F1000Res. 2018 Aug 24;7:1338. 2018. https://doi.org/10.12688/f1000research.15931.2
PMID: 30254741
PMCID: PMC6124377

Download and documentation

Source: http://www.bioinformatics.babraham.ac.uk
/projects/fastq_screen/fastq_screen_
v0.14.0.tar.gz
Documentation: http://www.bioinformatics.babraham.ac.uk
/projects/fastq_screen/_build/html/i
ndex.html
Home page: https://www.bwhpc-c5.de/wiki/index.php/F
astQ_screen
Links: http://www.bioinformatics.babraham.ac.uk
/projects/fastq_screen/

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