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FastQ Screen

FastQ Screen

FastQ Screen is a tool for quality control of DNA samples by screening against a reference genomes to validate the origins.

Topic

Genomics; Transcriptomics

Details

  • Operation: Sequencing quality control; Read mapping
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v>=3
  • Cost: Free
  • Version name: 0.14.0
  • Maturity: Stable
  • Credit: Medical Research Council (UK), the Biotechnology and Biological Sciences Research Council of the UK.
  • Contact: Steven Wingett steven.wingett _at_ babraham.ac.uk
  • Collection: -

Publications

Wingett SW, Andrews S "FastQ Screen: A tool for multi-genome mapping and quality control." F1000Res. 2018 Aug 24;7:1338. 2018. https://doi.org/10.12688/f1000research.15931.2
PMID: 30254741
PMCID: PMC6124377


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