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GETUTR

GETUTR is a tool estimate and quantify the usage of 3 prime UTRs in RNA-seq datasets

Topic

RNA-Seq; Sequence analysis; RNA; Gene transcripts

Details

Operation: RNA-Seq analysis
Software interface: Command-line user interface
Language: Python
Operating system: Linux
License: CC BY-NC-SA 4.0

Cost

Version name: 2.0.0

Maturity:

Credit: NRF, the Ministry of Science, ICT, and Future Planning, the Cooperative Research Program for Agriculture Science & Technology andDevelopment.
Contact: Jin-Wu Nam jwnam _at_ hanyang.ac.kr
Collection: -

Publications

Kim M, You BH, Nam JW "Global estimation of the 3' untranslated region landscape using RNA sequencing." Methods 2015 https://doi.org/10.1016/j.ymeth.2015.04.011
PMID: 25899044

Download and documentation

Source: http://big.hanyang.ac.kr/GETUTR/samples/
GETUTR.2.0.0.tar.gz
Documentation: http://big.hanyang.ac.kr/GETUTR/
Home page: http://big.hanyang.ac.kr/GETUTR/
Data: http://big.hanyang.ac.kr/GETUTR/samples/
refFlat.txt.gz

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