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GIREMI

GIREMI (genome-independent identification of RNA editing by mutual information) is a tool to predict adenosine-to-inosine editing in RNA-seq data.

Topic

RNA-Seq; RNA; Genetics; Sequence analysis

Details

Operation: Sequence editing
Software interface: Command-line user interface
Language: R, C, Perl
Operating system: Mac OS X
License: Not stated

Cost

Version name: -

Credit: The US National Institute of Health, the US National Science Foundation.
Contact: Qing Zhang zhqing _at_ ucla.edu | Xinshu Xiao gxxiao _at_ ucla.edu
Collection: -

Publications

Zhang Q, Xiao X "Genome sequence-independent identification of RNA editing sites." Nat. Methods 2015; 12(4):347-50 https://doi.org/10.1038/nmeth.3314
PMID: 25730491
PMCID: PMC4382388

Download and documentation

Source: https://github.com/zhqingit/giremi
Documentation: https://github.com/zhqingit/giremi/blob/
master/README.md
Home page: https://www.ibp.ucla.edu/research/xiao/G
IREMI.html

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