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GiniClust

GiniClust

GiniClust is a tool to detect rare cell types in single-cell RNA-seq (scRNA-seq) data.

Topic

Gene expression; Taxonomy; Cell biology; RNA-seq

Details

  • Operation: RNA-seq analysis; Expression analysis
  • Software interface: Graphical user interface
  • Language: R, Python
  • Operating system: Linux; Mac OS X
  • License: The MIT licence
  • Cost: Free
  • Version name: -
  • Maturity: Stable
  • Credit: Claudia Barr Award, National Institutes of Health (NIH), NHGRI.
  • Contact: gcyuan _at_ jimmy.harvard.edu
  • Collection: -

Publications

Jiang L, Chen H, Pinello L, Yuan GC "GiniClust: detecting rare cell types from single-cell gene expression data with Gini index." Genome Biol. 2016; 17(1):144 https://doi.org/10.1186/s13059-016-1010-4
PMID: 27368803
PMCID: PMC4930624


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