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Guide
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Guide

Guide (Genome Informatics Data Explorer) is a tool for the differential expression analysis of RNA-seq and microarray data. The Guide package is aimed for wet-lab biologists and uses the limma tool for the analyses but does not require specific programming knowledge.



Guide

Guide (Genome Informatics Data Explorer) is a tool for the differential expression analysis of RNA-seq and microarray data. The Guide package is aimed for wet-lab biologists and uses the limma tool for the analyses but does not require specific programming knowledge.

Topic

Gene expression; RNA; RNA-seq; Pathways; RNA-seq; Informatics

Details

  • Operation: Gene expression analysis; Annotation; Microarray data analysis; Analysis; Editing
  • Software interface: Graphical user interface
  • Language: R, Qt
  • Operating system: Mac OS X
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: Thanks to Gordon Smyth and Doug Hilton for guidance. Thanks to Yoji Kojima, Mike Wilson and Steve Dower for early testing. This work was made possible through Victorian State Government Operational Infrastructure Support and Australian Government NHMRC IRIISS. This research was supported by the Science and Industry Endowment Fund, and by a grant provided by CSL Limited.
  • Contact: Jarny Choi jchoi _at_ wehi.edu.au
  • Collection: -

Publications

Choi J "Guide: a desktop application for analysing gene expression data." BMC Genomics 2013 https://doi.org/10.1186/1471-2164-14-688
PMID: 24093424
PMCID: PMC3815230


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