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IsoLasso

IsoLasso is a tool

Topic

Transcriptomics; Sequence assembly; RNA-Seq; Gene expression

Details

Operation: Transcriptome assembly
Input: SAM, BAM
Output: -
Software interface: Command-line user interface
Language: C++
Operating system: Linux
License: Not stated

Cost

Version name: 2.6.1

Credit: NSF, NIH.
Contact: Li W iw _at_ cs.ucr.edu
Collection: -

Publications

Li W, Feng J, Jiang T "IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly." J. Comput. Biol. 2011; 18(11):1693-707 https://doi.org/10.1089/cmb.2011.0171
PMID: 21951053
PMCID: PMC3216102

Download and documentation

Source: http://alumni.cs.ucr.edu/~liw/isolasso-2
.6.1.tar.gz
Documentation: alumni.cs.ucr.edu/~liw/isolasso.html#ins
truction
Home page: http://alumni.cs.ucr.edu/~liw/isolasso.h
tml
Links: https://bioinformaticshome.com//tools/rn
a-seq/descriptions/CEM.html

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