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KPNN

KPNN

KPNN (Knowledge-primed neural networks) is a tool to interpret single-cell RNA-seq (sc-RNA-seq) data using deep learning algorithms.

Topic

RNA-Seq; Gene expression

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python/R/Shell
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Credit: Austrian Science Fund (FWF) Special Research Programme, the European Molecular Biology Organization (EMBO), the Austrian Academy of Sciences, European Union’s Horizon 2020 research and innovation programme.
  • Contact: Christoph Bock cbock _at_ cemm.oeaw.ac.at
  • Collection: -

Publications

Fortelny Nikolaus, Bock Christoph "Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data" bioRxiv https://doi.org/10.1101/794503


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