MISO (Mixture-of-Isoforms) is a tool for estimating expression levels of alternatively spliced genes and isoforms. The Authors have implemented MISO as an alternative to the Cufflinks tool. MISO is no longer maintained, but it is available for download.
Transcriptomics; RNA splicing; RNA-Seq
Katz Y, Wang ET, Airoldi EM, Burge CB "Analysis and design of RNA sequencing experiments for identifying isoform regulation." Nat Methods. 2010 Dec;7(12):1009-15. https://doi.org/10.1038/nmeth.1528
PMID: 21057496
PMCID: PMC3037023
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