A tool to estimate gene expression levels in RNA-seq data sets. The Matalaki algorithm uses unique k-mers for each gene to quickly map all the fragments to genes. According to the Authors, Matalaki is faster than conventional methods.
RNA-seq; Gene expression
Okamura Y, Kinoshita K "Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data." BMC Bioinformatics. 2018 Jul 16;19(1):266. https://doi.org/10.1186/s12859-018-2279-y
PMID: 30012088
PMCID: PMC6048772
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads