MetaDiff

MetaDiff is a tool to analyze isoform expression in RNA-seq data. The MetaDiff algorithm uses a random-effects meta-regression.

Topic

RNA-Seq; Gene expression

Details

Operation: Gene expression analysis
Software interface: Command-line user interface
Language: R;Java
Operating system: Linux; Microsoft Windows
License: The MIT licence

Cost

Version name: -

Credit: the National Institutes of Health, the Kaufman Center for Heart Failure at the Cleveland Clinic.
Contact: Cheng Jia jiacheng _at_ mail.med.upenn.edu
Collection: -

Publications

Jia C, Guan W, Yang A, Xiao R, Tang WH, Moravec CS, Margulies KB, Cappola TP, Li M, Li C "MetaDiff: differential isoform expression analysis using random-effects meta-regression." BMC Bioinformatics 2015 https://doi.org/10.1186/s12859-015-0623-z
PMID: 26134005
PMCID: PMC4489045

Download and documentation

Source: https://github.com/jiach/MetaDiff
Documentation: https://github.com/jiach/MetaDiff/blob/m
aster/README.md
Home page: https://github.com/jiach/MetaDiff

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MetaDiff

MetaDiff

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Details

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Download and documentation

TOOLS

1. SNP Tools

2. GWAS Tools

3. Genotype Imputation Tools

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12. In-house Software Tools