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NURD

NURD

NURD is a tool to estimate expression levels of isoforms in RNA-seq data. The NURD algorithm uses a binary interval search method and can correct for experimental sequencing biases both globally and locally. The home page is currently not available. You may email the Authors and request the source code.

Topic

Genetics; RNA-Seq; RNA splicing

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: Other
  • Cost: Free
  • Version name: -
  • Credit: The National Basic Research Program of China, the Hi-tech Research and Development Program of China
  • Contact: Xinyun Ma maxy218 _at_ gmail.com | Xuegong Zhang zhangxg _at_ tsinghua.edu.cn
  • Collection: -

Publications

Ma X, Zhang X "NURD: an implementation of a new method to estimate isoform expression from non-uniform RNA-seq data." BMC Bioinformatics. 2013 Jul 10;14:220. https://doi.org/10.1186/1471-2105-14-220
PMID: 23837734
PMCID: PMC3717102


Download and documentation

Currently not available or not maintained.








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