A tool to assemble RNA-seq data. The Necklace algorithm can assemble genomes both de novo, and guided by a template. It combines an assembled transcriptome with annotations from a reference.
Transcriptomics; RNA-seq
Davidson NM, Oshlack A "Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis." Gigascience. 2018 May 1;7(5). pii: 4990949. https://doi.org/10.1093/gigascience/giy045
PMID: 29722876
PMCID: PMC5946861
Davidson NM, Hawkins ADK, Oshlack A "SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes." Genome Biol. 2017 Aug 4;18(1):148. https://doi.org/10.1186/s13059-017-1284-1
PMID: 28778180
PMCID: PMC5543425
Davidson NM, Hawkins ADK, Oshlack A "Erratum to: SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes." Genome Biol. 2017 Aug 24;18(1):160. https://doi.org/10.1186/s13059-017-1303-2
PMID: 28836999
PMCID: PMC5571508
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