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PALMapper

PALMapper

PALMapper is a tool to align read from RNA-seq data. The PALMapper can compute spliced and unspliced alignments. The package GenomeMapper together with the spliced aligner QPALMA (see links). The PALMapper tool is available as a command-line tool or via the web service (https://galaxy.inf.ethz.ch/ ).

Topic

Transcriptomics; RNA-Seq; Mapping

Details

  • Operation: RNA-Seq analysis; Read mapping; Sequence alignment; Statistical calculation
  • Software interface: Web user user interface
  • Language: C++
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.4-rc3
  • Credit: -
  • Contact: andre.kahles _at_ inf.ethz.ch | raetsch _at_ inf.ethz.ch
  • Collection: -

Publications

Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G "RNA-Seq read alignments with PALMapper." Curr Protoc Bioinformatics 2010 https://doi.org/10.1002/0471250953.bi1106s32
PMID: 21154708


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