PALMapper is a tool to align read from RNA-seq data. The PALMapper can compute spliced and unspliced alignments. The package GenomeMapper together with the spliced aligner QPALMA (see links). The PALMapper tool is available as a command-line tool or via the web service (https://galaxy.inf.ethz.ch/ ).
Transcriptomics; RNA-Seq; Mapping
Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G "RNA-Seq read alignments with PALMapper." Curr Protoc Bioinformatics 2010 https://doi.org/10.1002/0471250953.bi1106s32
PMID: 21154708
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