PDEGEM (Positional Dependent Energy Guided Expression Model ) is a tool to estimate transcript abundance and isoform expression in RNA-seq data. The PDEGEM algorithm uses the Positional Dependent Nearest Neighborhood (PDNN) based technique to model the distribution of reads.
RNA-seq; RNA-seq; RNA
Xia Y, Wang F, Qian M, Qin Z, Deng M "PDEGEM: Modeling non-uniform read distribution in RNA-Seq data." BMC Med Genomics 2015 https://doi.org/10.1186/1755-8794-8-S2-S14
PMID: 26044773
PMCID: PMC4460722
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