PRAPI is a tool for the analysis of post-translational regulation in Is-Seq data. PRAPI can analyze alternative splicing and transcription initiation, alternative cleavage and polyadenylation, alternative transcription initiation and natural antisense transcripts, and circular RNAs. The PRAPI algorithm can combine Iso-Seq with RNA-seq or PAS-seq.
Transcription factors and regulatory sites; RNA-seq; Genetics; Data visualisation
Gao Y, Wang H, Zhang H, Wang Y, Chen J, Gu L "PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq." Bioinformatics. 2018 May 1;34(9):1580-1582. https://doi.org/10.1093/bioinformatics/btx830
PMID: 29280994
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