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QAPA
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QAPA

QAPA (Quantification of APA) is a tool that finds alternative polyadenylation (APA) codes from RNA-seq data sets.



QAPA

QAPA (Quantification of APA) is a tool that finds alternative polyadenylation (APA) codes from RNA-seq data sets.

Topic

RNA-seq; Genetic variation; Molecular genetics; Sequence sites, features and motifs

Details

  • Operation: PolyA signal detection
  • Software interface: Command-line user interface
  • Language: R;Python
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: Ontario Graduate Scholarship, Canadian Institutes of Health Research (CIHR), Charles Best Canada Graduate Scholarship, Medicine by Design
  • Contact: b.blencowe _at_ utoronto.ca
  • Collection: -

Publications

Ha KCH, Blencowe BJ, Morris Q "QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data." Genome Biol. 2018 Mar 28;19(1):45. https://doi.org/10.1186/s13059-018-1414-4
PMID: 29592814
PMCID: PMC5874996


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