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QuaCRS

QuaCRS

QuaCRS is a tool for integrated quality control of RNA-seq data. The QuaCRS package consolidates the FastQC, RNA-SeQC tools, and a collection of functions in the RSeQC.

Topic

RNA; Data management; RNA-Seq; Sequencing

Details

  • Operation: Sequencing quality control
  • Input: FASTQ, BAM
  • Output: -
  • Software interface: Command-line user interface; Web user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Open Software License ("OSL") v3.0
  • Cost: Free
  • Version name: 1.2
  • Maturity: Stable
  • Credit: The National Institutes of Health (NIH).
  • Contact: Nima Esmaili Mokaram esmailimokaram.1 _at_ buckeyemail.osu.edu | Karl Kroll Karl.Kroll _at_ osumc.edu | Alex Pelletier Alex.Pelletier _at_ osumc.edu
  • Collection: -

Publications

Kroll KW, Mokaram NE, Pelletier AR, Frankhouser DE, Westphal MS, Stump PA, Stump CL, Bundschuh R, Blachly JS, Yan P "Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline." Cancer Inform. 2014 Oct 15;13(Suppl 3):7-14. 2014. https://doi.org/10.4137/CIN.S14022
PMID: 25368506
PMCID: PMC4214596


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