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RAFSIL

RAFSIL

A tool for the detection of similarities between single-cell scRNA-seq data sets. The RAFSIL algorithm uses the random forest method in which it first detects features and then learns similarities.

Topic

Machine learning; Cell biology; Transcriptomics; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 0.2.5
  • Credit: The National Institutes of Health (NIH), the University of Pittsburgh School of Medicine.
  • Contact: kostka _at_ pitt.edu
  • Collection: -

Publications

Pouyan MB, Kostka D "Random forest based similarity learning for single cell RNA sequencing data." Bioinformatics. 2018 Jul 1;34(13):i79-i88. https://doi.org/10.1093/bioinformatics/bty260
PMID: 29950006
PMCID: PMC6022547


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