For better experience, turn on JavaScript!

RNA-MATE
Home » Tools » RNA-seq Tools and Software » RNA-seq core analysis » RNA-MATE

RNA-MATE

A recursive mapping strategy for high-throughput RNA-sequencing data. This pipeline described here is written in Perl, and makes use of a PBS queue manager, however it can be configured to use LSF or SGE



RNA-MATE

A recursive mapping strategy for high-throughput RNA-sequencing data. This pipeline described here is written in Perl, and makes use of a PBS queue manager, however it can be configured to use LSF or SGE

Topic

RNA-Seq

Details

  • Operation: Mapping
  • Software interface: Workflow
  • Language: Perl
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: National Health and Medical Research Council, the Australian Research Council, he Australian Stem Cell Centre, University of Queensland.
  • Contact: Nicole Cloonan n.cloonan _at_ imb.uq.edu.au
  • Collection: -

Publications

Cloonan N, Xu Q, Faulkner GJ, Taylor DF, Tang DT, Kolle G, Grimmond SM "RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data." Bioinformatics. 2009 Oct 1;25(19):2615-6. Epub 2009 Jul 30. https://doi.org/10.1093/bioinformatics/btp459
PMID: 19648138
PMCID: PMC2752615


Download and documentation

Currently not available or not maintained.







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads