For better experience, turn on JavaScript!


RNA-Skim

RNA-Skim

RNA-Skim is a tool to quantify transcripts in RNA-seq data. The RNA-Skim algorithm uses a concept of sig-mers, a type of k-mers, for quantification based on distinct clusters of transcripts.

Topic

RNA-Seq; RNA; Gene expression

Details

  • Operation: RNA-Seq analysis; RNA-Seq quantification
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Credit: The National Institutes of Health (NIH). U.S. National Science Foundation (NSF)
  • Contact: Wei Wang weiwang _at_ cs.ucla.edu
  • Collection: -

Publications

Zhang Z, Wang W "RNA-Skim: a rapid method for RNA-Seq quantification at transcript level." Bioinformatics. 2014 Jun 15;30(12):i283-i292. https://doi.org/10.1093/bioinformatics/btu288
PMID: 24931995
PMCID: PMC4058932


Download and documentation








If you find errors, please report here.