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RNASeqPower

RNASeqPower

RNASeqPower is an R tool for estimating power and computing RNA-seq sample sizes.

Topic

RNA-Seq

Details

  • Operation: RNA-Seq analysis; Statistical calculation
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU Lesser General Public License v>=2
  • Cost: Free
  • Version name: 1.26.0
  • Credit: Center for Individualized Medicine; Mayo Clinic, the National Institute of Health (NIH).
  • Contact: Terry M Therneau therneau.terry _at_ mayo.edu
  • Collection: Bioconductor

Publications

Hart SN, Therneau TM, Zhang Y, Poland GA, Kocher JP "Calculating sample size estimates for RNA sequencing data." J Comput Biol. 2013 Dec;20(12):970-8. 20. https://doi.org/10.1089/cmb.2012.0283
PMID: 23961961
PMCID: PMC3842884


Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J1, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M "Orchestrating high-throughput genomic analysis with Bioconductor." Nat Methods. 2015 Feb;12(2):115-21. https://doi.org/10.1038/nmeth.3252
PMID: 25633503
PMCID: PMC4509590


Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. "Bioconductor: open software development for computational biology and bioinformatics." Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15. https://doi.org/10.1186/gb-2004-5-10-r80
PMID: 15461798
PMCID: PMC545600


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