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RNASeqPowerCalculator

RNASeqPowerCalculator is a tool for computing the sample size and estimating the power of RNA-seq data sets.

Topic

RNA-Seq; RNA; Sequencing; Gene expression

Details

Operation: RNA-Seq analysis; Statistical calculation
Software interface: Command-line user interface
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Version name: -

Maturity:

Credit: The National Institute of General Medical Sciences.
Contact: LGarmire _at_ cc.hawaii.edu
Collection: -

Publications

Ching T, Huang S, Garmire LX "Power analysis and sample size estimation for RNA-Seq differential expression." RNA. 2014 Nov;20(11):1684-96. https://doi.org/10.1261/rna.046011.114
PMID: 25246651
PMCID: PMC4201821

Download and documentation

Source: http://www2.hawaii.edu/~lgarmire/example
.zip
Documentation: http://www2.hawaii.edu/~lgarmire/RNASeqP
owerCalculator.htm
Home page: http://www2.hawaii.edu/~lgarmire/RNASeqP
owerCalculator.htm
Data: http://bowtie-bio.sourceforge.net/recoun
t/

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