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RNAseqEval

RNAseqEval is a tool collection for evaluation and benchmarking of RNA-seq mapping.

Topic

RNA splicing; RNA-seq; RNA alignment

Details

Operation: Sequence alignment; Mapping
Software interface: Command-line user interface
Language: Python
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Version name: -

Credit: Croatian Science Fundation
Contact: Šikic M mile.sikic _at_ fer.hr
Collection: -

Publications

Krizanovic K, Echchiki A, Roux J, Sikic M "Evaluation of tools for long read RNA-seq splice-aware alignment." Bioinformatics. 2018 Mar 1;34(5):748-754. https://doi.org/10.1093/bioinformatics/btx668
PMID: 29069314
PMCID: PMC6192213

Download and documentation

Source: https://github.com/kkrizanovic/RNAseqEva
l
Documentation: https://github.com/kkrizanovic/RNAseqEva
l/blob/master/RNAseq_benchmark/Data_
preparation.md
Home page: https://github.com/kkrizanovic/RNAseqEva
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Links: https://github.com/kkrizanovic/RNAseqEva
l/blob/master/RNAseq_benchmark/RNAse
q_benchmark.md

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