ROP (Read Origin Protocol) is a tool to discover the source of all reads originating from RNA molecules in RNA-seq datasets.
Functional, regulatory and non-coding RNA; Mapping; RNA-seq
Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, Ophoff RA, Santana JR, Levanon EY, Woodruff PG, Burchard E, Seibold MA, Shifman S, Eskin E, Zaitlen N "ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues." Genome Biol. 2018 Feb 15;19(1):36. https://doi.org/10.1186/s13059-018-1403-7
PMID: 29548336
PMCID: PMC5857127
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