RSVP is a tool to predict protein-coding gene isoforms in RNA-seq data. The RSVP algorithm uses ORF graphs, genomic DNA evidence, and aligned RNA-seq reads for the predictions.
RNA-Seq; Gene and protein families
Majoros WH, Lebeck N, Ohler U, Li S "Improved transcript isoform discovery using ORF graphs." Bioinformatics. 2014 Jul 15;30(14):1958-64. Epub 2014 Mar 22. https://doi.org/10.1093/bioinformatics/btu160
PMID: 24659106
PMCID: PMC4288128
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