SOAPfusion

SOAPfusion is a tool to discover fusions in paired-endn RNA-seq data.

Topic

Transcriptomics; RNA-Seq; Gene structure

Details

Operation: Genetic mapping; Genetic variation analysis
Software interface: Command-line user interface
Language: C++;Perl
Operating system: Linux
License: Not stated

Cost

Version name: -

Maturity:

Credit: Guangdong Innovative Research Team Program, General Research Fund of the Hong Kong Government.
Contact: soap _at_ genomics.org.cn
Collection: -

Publications

Wu J, Zhang W, Huang S, He Z, Cheng Y, Wang J, Lam TW, Peng Z, Yiu SM "SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads." Bioinformatics. 2013 Dec 1;29(23):2971-8. Epub 2013 Oct 11. https://doi.org/10.1093/bioinformatics/btt522
PMID: 24123671

Download and documentation

Currently not available or not maintained.

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SOAPfusion

SOAPfusion

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