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SPARSim

SPARSim

SPARSim is a tool to simulate single-cell RNa-seq (scRNA-seq) count data. The SPARSim algorithm uses Gamma-Multivariate Hypergeometric model.

Topic

RNA-seq; Transcriptomics; Gene expression

Details

  • Operation: Simulated gene expression data generation
  • Software interface: Command-line user interface; Library
  • Language: R
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.9.5
  • Credit: PROACTIVE 2017 “From Single-Cell to Multi-Cells Information Systems Analysis” (Department of Information Engineering, University of Padova).
  • Contact: Barbara Di Camillo barbara.dicamillo _at_ unipd.it
  • Collection: -

Publications

Baruzzo G, Patuzzi I, Di Camillo B "SPARSim Single Cell: a count data simulator for scRNA-seq data." Bioinformatics. 2019 Oct 9. https://doi.org/10.1093/bioinformatics/btz752
PMID: 31598633


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