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STARChip

STARChip (Star Chimeric Post) is a tool for detect fused sequences and circular RNA from the output of the STAR alignment tool.

Topic

Functional, regulatory and non-coding RNA; Nucleic acid structure analysis; RNA-seq

Details

Operation: RNA structure prediction
Input: STAR output
Output: -
Software interface: Command-line user interface
Language: Perl
Operating system: Linux
License: The MIT License

Cost

Version name: 2.6.0c

Maturity:

Credit: The Icahn Institute for Genomics and Multiscale Biology.
Contact: Nicholas K Akers nicholas.kipp.akers _at_ gmail.com
Collection: -

Publications

Akers NK, Schadt EE, Losic B "STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts." Bioinformatics. 2018 Jul 15;34(14):2364-2370. https://doi.org/10.1093/bioinformatics/bty091
PMID: 29474638
PMCID: PMC6041974

Download and documentation

Source: https://github.com/LosicLab/STARChip
Documentation: https://starchip.readthedocs.io/en/lates
t/
Home page: https://github.com/LosicLab/STARChip
Links: https://bioinformaticshome.com/tools/rna
-seq/descriptions/STAR.html

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