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Scotty

Scotty

Scotty is a web-based tool for estimating the statistical power in RNA_seq data samples. It helps to optimize the sequencing depth and the sample sizes.

Topic

RNA-Seq; RNA; Sequencing; Gene expression

Details

  • Operation: RNA-Seq analysis; Statistical calculation
  • Software interface: Web user interface
  • Language: MATLAB
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: -
  • Maturity: mature
  • Credit: Swiss National Science Foundation, The École polytechnique fédérale de Lausanne (EPFL), Human Frontier Science Program.
  • Contact: Gabor T. Marth gabor.marth _at_ bc.edu | Michele Busby busbym _at_ bc.edu
  • Collection: -

Publications

Busby MA, Stewart C, Miller CA, Grzeda KR, Marth GT "Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression." Bioinformatics. 2013 Mar 1;29(5):656-7. 2013 Jan 12. https://doi.org/10.1093/bioinformatics/btt015
PMID: 23314327
PMCID: PMC3582267


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