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SeqTU

SeqTU

SeqTU is a tool for the analysis of strand-specific RNA-seq data. The SeqTU algorithm us machine learning approach.

Topic

Machine learning; RNA-seq; Transcription; RNA-seq; RNA

Details

  • Operation: RNA-seq analysis; Analysis; RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Credit: US Department of Energy BioEnergy Science Center, the Office of Biological and Environmental Research.
  • Contact: Ying Xu xyn _at_ bmb.uga.edu
  • Collection: -

Publications

Chou WC, Ma Q, Yang S, Cao S, Klingeman DM, Brown SD, Xu Y "Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum." Nucleic Acids Res. 2015 May 26;43(10):e67. 12. https://doi.org/10.1093/nar/gkv177
PMID: 25765651
PMCID: PMC4446414


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