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SpliceTrap
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SpliceTrap

SpliceTrap is a tool to quantify exon inclusion ratios in paired-end RNA-seq data. The SpliceTrap algorithm quantifies the extent to which each exon is included, skipped has size variations.



SpliceTrap

SpliceTrap is a tool to quantify exon inclusion ratios in paired-end RNA-seq data. The SpliceTrap algorithm quantifies the extent to which each exon is included, skipped has size variations.

Topic

RNA splicing; RNA-Seq

Details

  • Operation: Statistical calculation
  • Software interface: Command-line user interface
  • Language: C++;Perl
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: 0.90.5
    • Maturity: Stable
  • Credit: National Institutes of Health (NIH).
  • Contact: jiewu _at_ mit.edu | michael.zhang _at_ utdallas.edu
  • Collection: -

Publications

Wu J, Akerman M, Sun S, McCombie WR, Krainer AR, Zhang MQ "SpliceTrap: a method to quantify alternative splicing under single cellular conditions." Bioinformatics. 2011 Nov 1;27(21):3010-6. Epub 2011 Sep 6. https://doi.org/10.1093/bioinformatics/btr508
PMID: 21896509
PMCID: PMC3198574


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